Total 224 results found.
Tag: All Publications Ordering
Appiah-Opong R., Commandeur J.N.M., van Vugt-Lussenburg B.M.A., Vermeulen N.P.E Inhibition of human recombinant cytochrome P450s by curcumin and curcumin decomposition products. Toxicology 235 (2007) pp: 83-91. Pubmed
Van Liempd S.M., Kool J., Meerman J.H.N., Irth H., Vermeulen N.P.E. Metabolic profiling of endocrine-disrupting compounds by on-line cytochrome p450 bioreaction coupled to on-line receptor affinity screening. Chem. Res. Toxicol. 20 (2007) pp: 1825-32. Pubmed
Bonifacio A., Groenhof A.R., Keizers P.H.J., de Graaf C., Commandeur J.N.M., Vermeulen N.P.E., Ehlers A.W., Lammertsma K., Gooijer C., van der Zwan G. Altered spin state equilibrium in the T309V mutant of Cytochrome P450 2D6: A spectroscopic and computational study. J. Biolog. Inorg. Chem. 12 (2007) pp: 645-654. Pubmed
Damsten M.C., Commandeur J.N.M., Fidder A., Hulst A.G., Touw D., Noort D., Vermeulen N.P.E. Liquid chromatography-tandem mass spectrometry detection of covalent binding of acetaminophen to human serum albumin. Drug. Metab. Disp. 35 (2007) pp: 1408-1417. Pubmed
Hritz J., Oostenbrink C. Optimization of replica exchange molecular dynamics by fast mimicking. J. Chem. Phys. 127 (2007) pp: 204104. Pubmed
Hoos J.S., Damsten M.C., de Vlieger J.S., Commandeur J.N.M., Vermeulen N.P.E., Niessen W.M., Lingeman H., Irth H. Automated detection of covalent adducts to human serum albumin by immunoaffinity chromatography, on-line solution phase digestion and liquid chromatography-mass spectrometry. J. Chromatogr. B. 859 (2007) pp: 147-156. Pubmed
Kool J., van Liempd S.M., Harmsen S., Schenk T., Irth H., Commandeur J.N.M., Vermeulen N.P.E. An on-line post-column detection system for the detection of reactive-oxygen-species-producing compounds and antioxidants in mixtures. Anal. and Bioanal. Chem. 388 (2007) pp: 871-879. Pubmed
Kool J., van Liempd S.M., Harmsen S., Beckman J., van Elswijk D., Commandeur J.N.M., Vermeulen N.P.E. Cytochrome P450 bio-affinity detection coupled to gradient HPLC: on-line screening of affinities to Cytochrome P4501A2 and 2D6. J. Chromatogr. B. 858 (2007) pp: 49-58. Pubmed
Dolenc J., Baron R., Oostenbrink C., Koller J., van Gunsteren W.F. Configurational entropy change of netropsin and distamycin upon DNA minor-groove binding. Biophys. J. 91 (2006) pp: 1460 -1470.
Feenstra KA, Hofstetter K, Bosch R, Schmid A, Commandeur JN, Vermeulen NPE. Enantioselective substrate binding in a monooxygenase protein model by molecular dynamics and docking. Biophys J. 2006 Nov 1; 91(9): 3206-16.
Lentz O, Feenstra A, Habicher T, Hauer B, Schmid RD, Urlacher VB. Altering the regioselectivity of cytochrome P450 CYP102A3 of Bacillus subtilis by using a new versatile assay system. ChemBioChem. 2006 Feb; 7(2): 345-50.
Hritz J., Zoldak G., Sedlak E. Cofactor assisted gating mechanism in the active site of NADH oxidase from Thermus thermophilus. Proteins 64 (2006) pp: 465-476.

Human NAD(P)H:quinone Oxidoreductase 1 (NQO1)-Mediated Inactivation of Reactive Quinoneimine Metabolites of Diclofenac and Mefenamic Acid. Vredenburg G, Elias NS, Venkataraman H, Hendriks DF, Vermeulen NP, Commandeur JN, Vos JC. Chem. Res. Toxicol. 2014 Feb 26. [Epub ahead of print]

Keizers PH, Van Dijk BR, De Graaf C, Van Vugt-Lussenburg BM, Vermeulen NPE, Commandeur JNM. Metabolism of N-substituted 7-methoxy-4-(aminomethyl) -coumarins by cytochrome P450 2D6 mutants and the indication of additional substrate interaction points. Xenobiotica. 2006 Sep; 36(9): 763-71.
Van Liempd S.M., Kool J., Niessen W.M., Elswijk D.E., Irth H., Vermeulen N.P.E. On line Formation, separation and estrogen receptor affinity screening of cytochrome P450-derived metabolites of selective estrogen receptor modulators. Drug Metab. Dispos. 2006 Sep; 34(9): 1640-9
Zhou Y., Oostenbrink C., Jongejan A., van Gunsteren W.F., Hagen W.R., de Leeuw S.W., Jongejan J.A. Computational study of ground state chiral induction in small peptides: Comparison of the relative stability of selected amino acid dimers and oligomers in homochiral and heterochiral combinations. J. Comput. Chem. 27 (2006) pp: 857-867.
Vermeulen NPE. Farmacochemie in silico. Pharmac. Weekblad, 2006, 12, 418-419.
K. Anton Feenstra†, Chris de Graaf† and Nico P.E. Vermeulen. Cytochrome P450 Protein Modeling and Ligand Docking. In: 'Drug Metabolism/Drug Discovery & Development', Editor P.W. Erhardt, IUPAC-series, 2006, in press
Dolenc J., Baron R., Oostenbrink C., Koller J., van Gunsteren W.F. Configurational entropy change of netropsin and distamycin upon DNA minor-groove binding. Biophys. J. 91 (2006) pp: 1460-1470. Pubmed
van Gunsteren W.F., Bakowies D., Baron R., Chandrasekhar I., Christen M., Daura X., Gee P., Geerke D.P., Glättli A., Hünenberger P.H., Kastenholz M.A., Oostenbrink C., Schenk M., Trzesniak D., van der Vegt N.F.A., Yu H.B. Biomolecular modeling: goals, problems, perspectives. Angew. Chem. 118 (2006) pp: 4168-4198. Angew. Chem. Int. Ed. 45 (2006) pp: 4064-4092. Pubmed
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